Commits · master · Omnicrobe / text-mining-workflow

Oct 21, 2024
- Merge branch 'dev' into 'master' · 90eb8a98
  Mouhamadou Ba authored 4 months ago
  
  updated snakefiles See merge request !73
  90eb8a98
- add : extract pmid list · 4de753b9
  Mouhamadou Ba authored 4 months ago
  
  4de753b9
May 15, 2024
- reset · 3b26a24b
  Mouhamadou Ba authored 10 months ago
  
  3b26a24b
- set yatea output · 72c0e4e6
  Mouhamadou Ba authored 10 months ago
  
  72c0e4e6
- set yatea output · f4507d0e
  Mouhamadou Ba authored 10 months ago
  
  f4507d0e
Apr 12, 2024
- Merge branch '125-refactor-alvis-plans' into 'dev' · 507c9bcd
  Mouhamadou Ba authored 11 months ago
  
  Resolve "Refactor alvis plans" Closes #125 See merge request !71
  507c9bcd
- add option to output pmid lists · 07e7e1d9
  Mouhamadou Ba authored 11 months ago
  
  07e7e1d9
- update mesh terms after changes in the taxo paths · c193c7d8
  Mouhamadou Ba authored 11 months ago
  
  c193c7d8
- add yatea output to allow its deletion · bcc54e06
  Mouhamadou Ba authored 11 months ago
  
  bcc54e06
Apr 04, 2024
- finished merge with dev · 599f3ae8
  Robert Bossy authored 11 months ago
  
  599f3ae8
- easy merges · 14d6878e
  Robert Bossy authored 11 months ago
  
  14d6878e
Mar 28, 2024

Robert Bossy authored 11 months ago

- replaced all tabs with four spaces
- remove yatea files because latest AlvisNLP versions complain about existing output-feed

1cab45e9

Oct 30, 2023
- correct plans · d7efbfab
  Mouhamadou Ba authored 1 year ago
  
  d7efbfab
Oct 09, 2023
- Merge branch 'taxa-fixes' into 'dev' · 195005ea
  Mouhamadou Ba authored 1 year ago
  
  Taxa fixes See merge request !70
  195005ea
Oct 06, 2023
- Merge branch 'dev' into 'taxa-fixes' · c511021c
  Mouhamadou Ba authored 1 year ago
  
  # Conflicts: # plans/taxa.plan
  c511021c
- Merge branch '110-meilleure-desambiguisation-des-abbreviations-des-taxons' into 'dev' · de51a95b
  Mouhamadou Ba authored 1 year ago
  
  Resolve "Meilleure désambiguïsation des abbréviations des taxons" Closes #110 See merge request !64
  de51a95b
- Merge branch 'dev' into '110-meilleure-desambiguisation-des-abbreviations-des-taxons' · 00a5cf27
  Mouhamadou Ba authored 1 year ago
  
  # Conflicts: # process-evaluate_BioNLP-OST.snakefile
  00a5cf27
Aug 07, 2023
- removed unused plan · 74c065fb
  louisedeleger authored 1 year ago
  
  74c065fb
- updated name of main plan · 0a063ace
  louisedeleger authored 1 year ago
  
  0a063ace
Aug 04, 2023
- removed syntax parameter · 3cdbe1ae
  louisedeleger authored 1 year ago
  
  3cdbe1ae
- removed syntax plan · a467d9e4
  louisedeleger authored 1 year ago
  
  a467d9e4
- separate plans for units and geo · c58b9b4f
  louisedeleger authored 1 year ago
  
  c58b9b4f
- add rigid entities to segmentation plan · 7ef37f4d
  louisedeleger authored 1 year ago
  
  7ef37f4d
- remove syntax, use separate plans for pos, term extraction, update deprecated parameters · 9607c99f
  louisedeleger authored 1 year ago
  
  9607c99f
- remove syntax, use separate plan for selecting microorg., update deprecated parameters · 1e304532
  louisedeleger authored 1 year ago
  
  1e304532
- rename main plan · 219ea687
  louisedeleger authored 1 year ago
  
  219ea687
Aug 02, 2023
- renamed pos feature · 8a898ac1
  louisedeleger authored 1 year ago
  
  8a898ac1
- output cleanup · b4159d28
  louisedeleger authored 1 year ago
  
  b4159d28
- include food process lexicon projection in habitat plan · 4a44ae3f
  louisedeleger authored 1 year ago
  
  4a44ae3f
- separate plan for selecting microorganisms · 3f571cca
  louisedeleger authored 1 year ago
  
  3f571cca
- separate plan for stopwords · 46e35927
  louisedeleger authored 1 year ago
  
  46e35927
Jul 26, 2023
- separate plans for term extraction and ner postprocessing · e168d221
  louisedeleger authored 1 year ago
  
  e168d221
- separate plan for relations · f268b790
  louisedeleger authored 1 year ago
  
  f268b790
- separate plan for output · 287135c1
  louisedeleger authored 1 year ago
  
  287135c1
- modified segmentation (removed syntax) and postagging (separate plan) · bb387c66
  louisedeleger authored 1 year ago
  
  bb387c66
- renamed main plan · be3a2628
  louisedeleger authored 1 year ago
  
  be3a2628
Jul 13, 2023
- restrict ancestor-coreference disambiguation to genus and species · f9b127e9
  Robert Bossy authored 1 year ago
  
  f9b127e9
- case sensitive projection and whitespace normalization · e636d36b
  Robert Bossy authored 1 year ago
  
  e636d36b
- process full-text sections · b2e3b4d7
  Robert Bossy authored 1 year ago
  
  b2e3b4d7
Jul 12, 2023
- default disambiguation for very common taxa · b952b53b
  Robert Bossy authored 1 year ago
  
  b952b53b