.gitlab-ci.yml

README.md

Snakefile

config.yaml

doc/Pan1c.documentation.json

example/config_CICD.yaml

getApps.sh

rules/tools.smk

runSnakemakeSLURM.sh

scripts/Syri.figs_mm2.sh

scripts/Syri.figs_wfm.sh

scripts/VCF.stats_figs.py

scripts/asm.pan1c_QC.py

scripts/chrGraphs.stats_aggregate.py

scripts/chrGraphs.stats_figs.py

scripts/chrInput.stats_compute.py

scripts/contig.pos_figs.R

scripts/core.stats_compute.py

scripts/getPanacusHG.sh

scripts/getTags.py